rs27970379 SNP Detail

Summary

• ID
  rs27970379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71576582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATC TGTTTTTTAT TTTTCCATGT
  R
  CAGAGTAGCT TTCTGCATGC CACCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38122702	NES09282359	PERLEGEN	MM_PANEL2	f	SNP	G			A	A	G		G	A	G		A	A	A		A
ss45280321	mCV24287562	ABI	CRAMUS_MOUSE	f	SNP		G	A				G	G
ss320340051	CHEV_2_71584295	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27970379					SNP	G	G	A	A	A	G	G	G	A	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38122702	NES09282359	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71576582 () rs orientation: forward

Symbol	Name	Function Class
Gm13647	predicted gene 13647	841 bp downstream
Gm13663	predicted gene 13663	1269 bp upstream
Gm17250	predicted gene, 17250	within coordinates
Gm74659	predicted gene, 74659	269 bp downstream
Rr62438	regulatory region 62438	within coordinates
Rr373341	regulatory region 373341	188 bp downstream
Tssr18283	transcription start site region 18283	377 bp downstream
Tssr24495	transcription start site region 24495	466 bp upstream