rs27970380 SNP Detail

Summary

• ID
  rs27970380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71576390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCCTCCC AACATGGCCC
  AGCTCAACTT GGTCATGTCC ACTCTGGACT CTCAGATATC CCAGTTCCTG CCCCTGGCTG
  TGCTCTCCCT TTTATTTATA ATAAACTTCG TCCTGCACCT AGAAGCGGTC ATGACCTTTC
  CTTTCCTTTC TTTCCTTTTC TTTTTTCTTT CTTTATTTAT TTTTCCCATT CACCCCTGGG
  Y
  TTTATTCTTT GAGAACACAG TGCCTTTTCC CCTTCCCTGT TTTCCAGAAC CAGGCTGTGT
  TACCGTAACT TGGAGATCTT TCCATCGCTT TTGGCTTTGG TTTGGAGAAG CAGGTAAGTC
  AGTAACATGA AAATTCTATG ACGCGAGCCT GAGAGGGCTT AGCTTCACAT CTGTTTTTTA
  TTTTTCCATG TGCAGAGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38122703	NES09282357	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27970380					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38122703	NES09282357	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71576390 () rs orientation: forward

Symbol	Name	Function Class
Gm13647	predicted gene 13647	649 bp downstream
Gm13663	predicted gene 13663	1461 bp upstream
Gm17250	predicted gene, 17250	within coordinates
Gm74659	predicted gene, 74659	77 bp downstream
Rr62438	regulatory region 62438	within coordinates
Rr373341	regulatory region 373341	within coordinates
Tssr18283	transcription start site region 18283	185 bp downstream
Tssr24495	transcription start site region 24495	274 bp upstream