rs27970390 SNP Detail

Summary

• ID
  rs27970390
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71574851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCT CCCCACATCC ACGGACATCG
  M
  ACGTCTGGAA TACCAGCCCT GGGAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38122713	NES09282420	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	A		C	A	C	A		C	C	A	C		A
ss45341899	mCV24287561	ABI	CRAMUS_MOUSE	f	SNP		A	C					A		A
ss146749265	ENSMUSSNP358336	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							A
ss320340040	CHEV_2_71582564	CHEVERUD	SCREENING_POP	f	SNP													C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27970390					SNP	A	A	C	C	C	C	A	A	C	A	C	A	C	C	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38122713	NES09282420	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71574851 () rs orientation: forward

Symbol	Name	Function Class
Gm13647	predicted gene 13647	within coordinates
Gm17250	predicted gene, 17250	within coordinates
Gm74659	predicted gene, 74659	1338 bp upstream
Rr62438	regulatory region 62438	within coordinates
Rr373341	regulatory region 373341	within coordinates
Tssr18283	transcription start site region 18283	1317 bp upstream
Tssr24495	transcription start site region 24495	1233 bp downstream