rs27970793 SNP Detail

Summary

• ID
  rs27970793
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:66270649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGATCTCC TAAGCACAGC
  CCCTCCTGAC CCAATGCAGT TAACCCAACC TCATTCAGCG CTAGTATCAA ATGACACTGG
  AGCTGCTGCA GTATGCATCC CGAGACTAAG TAGGCAGGAT TTATTATCAG CAGAAGTCCC
  CTAACTACCA GGTTATTCAA GCTCCGTTCT TGTCACAAAC AGGCGCGGCG GAAGACACAG
  K
  GCAGCAGACT CAGAGCTCAT TTACAAGACA AGCGAATTCT CAGTTAGAGA CAAGGGCAGC
  GCGGCAGCGA ACTGCAGTAA ATCTTTTCAC GCTCACAGCA ACATCTAACA ATGCTCTCCT
  GCAACGCCTC AGATCAAACG AATCCTACTT GGTTTAAACA TCAAATCAAC ACCATAAAAA
  AGGCTTCATT AGCAAAGTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss38142513	NES09291998	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27970793					SNP	T	T	T	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38142513	NES09291998	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66270649 () rs orientation: forward

Symbol	Name	Function Class
Gm13629	predicted gene 13629	575 bp upstream
Rr558183	regulatory region 558183	82 bp proximal
Scn1a	sodium channel, voltage-gated, type I, alpha	Intron
Tssr18000	transcription start site region 18000	551 bp upstream
Tssr18001	transcription start site region 18001	608 bp upstream
Tssr24381	transcription start site region 24381	448 bp downstream
Tssr24382	transcription start site region 24382	590 bp downstream
Tssr24383	transcription start site region 24383	844 bp downstream