rs27970794 SNP Detail

Summary

• ID
  rs27970794
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:66270635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCTCAG CCCGCCAGAT
  CTCCTAAGCA CAGCCCCTCC TGACCCAATG CAGTTAACCC AACCTCATTC AGCGCTAGTA
  TCAAATGACA CTGGAGCTGC TGCAGTATGC ATCCCGAGAC TAAGTAGGCA GGATTTATTA
  TCAGCAGAAG TCCCCTAACT ACCAGGTTAT TCAAGCTCCG TTCTTGTCAC AAACAGGCGC
  K
  GCGGAAGACA CAGTGCAGCA GACTCAGAGC TCATTTACAA GACAAGCGAA TTCTCAGTTA
  GAGACAAGGG CAGCGCGGCA GCGAACTGCA GTAAATCTTT TCACGCTCAC AGCAACATCT
  AACAATGCTC TCCTGCAACG CCTCAGATCA AACGAATCCT ACTTGGTTTA AACATCAAAT
  CAACACCATA AAAAAGGCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38142514	NES09291997	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27970794					SNP	G	G	G	G	T	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38142514	NES09291997	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66270635 () rs orientation: forward

Symbol	Name	Function Class
Gm13629	predicted gene 13629	589 bp upstream
Rr558183	regulatory region 558183	96 bp proximal
Scn1a	sodium channel, voltage-gated, type I, alpha	Intron
Tssr18000	transcription start site region 18000	565 bp upstream
Tssr18001	transcription start site region 18001	622 bp upstream
Tssr24381	transcription start site region 24381	462 bp downstream
Tssr24382	transcription start site region 24382	604 bp downstream
Tssr24383	transcription start site region 24383	858 bp downstream