rs27970798 SNP Detail

Summary

• ID
  rs27970798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:66269998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA AGGCAGTTTT CAATGTTCTA
  Y
  CCACAGTAAT CCTGTAGTTA GTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38142518	NES09291993	PERLEGEN	MM_PANEL2	f	SNP			T	T	T	C		C	C	C		C	C	C		C
ss45264234	mCV23089898	ABI	CRAMUS_MOUSE	f	SNP	C	T	T				T		C
ss146716935	ENSMUSSNP7204525	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss320323961	CHEV_2_66277711	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27970798					SNP	C	T	T	T	T	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38142518	NES09291993	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66269998 () rs orientation: forward

Symbol	Name	Function Class
Gm13629	predicted gene 13629	1226 bp upstream
Rr558183	regulatory region 558183	733 bp proximal
Scn1a	sodium channel, voltage-gated, type I, alpha	Intron
Tssr18000	transcription start site region 18000	1202 bp upstream
Tssr18001	transcription start site region 18001	1259 bp upstream
Tssr24381	transcription start site region 24381	1099 bp downstream
Tssr24382	transcription start site region 24382	1241 bp downstream
Tssr24383	transcription start site region 24383	1495 bp downstream