rs27970800 SNP Detail

Summary

• ID
  rs27970800
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:66269012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTACAGA GAGAAACTGA
  GCACCAAAGG GGCCAGTGAT ATGTGCAAAG TCGCTCTGAG CATATAAGAG AGGTAGGTCC
  TCTAGTGTAT TTACATCGTG CCATTTAGCT TCAAAGAGCT AGTATTCCAC ATGGAACTGC
  TGAAAAACCA ATATTGCTGG GAACCCCTTG CACTTCAGAT ATGGTACATA ACTGCACAGT
  M
  AACATCAGTC CACAGCTAGC CATAGTTAGG CCAGGCAAGA AGAAACAGAG AATTTAATTA
  TGTAACACCT ATTCAGATAT TGTATGAAAA CCATTTTCAT ATCTGACCAA GTTACTGTCC
  CATGTACTGG ATCTTCACAC ACCTCACTAC TGCCTGGAGG TTGTAAGAAC TTGCATTTCT
  AGAACCTACA AAGGGAAGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38142520	NES09292045	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	C	A	A	C		A	A	A
ss146716934	ENSMUSSNP6704736	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A					A			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27970800					SNP	A	A	A	A	A	C	A	A	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38142520	NES09292045	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66269012 () rs orientation: forward

Symbol	Name	Function Class
Rr558183	regulatory region 558183	1719 bp proximal
Scn1a	sodium channel, voltage-gated, type I, alpha	Intron