rs27971695 SNP Detail

Summary

• ID
  rs27971695
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70935341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAAGCAG AAGGTTAAAA
  GTTACCATTG TTTCACTTCC TTCTGAACCC TGCAAAATCT GAGCACAACA CGGTTGTGTT
  TGAATGGGAA ACAGAAGCAC AGAGAAGCTC ATCACTGCCC CATGAGGCCC ACAGCAAATC
  GGAGAAACCC ATGCTCAGAA TGAGTGGAGC CTGAGACAAG AGAAGCCTGG GAGAGAAGAG
  K
  CCAAGGCTGT GATCTGGGAG GGCCCCTCTC CCCTACCACG CCCCCCTTCC CCCTCCCTTA
  GCTTCCATGA GCCTCCACAT CACTGATTCT TGTTTGAAGG AGGCCTCTGT GCCTTTGAGA
  TTTAAGATAC CCATCGCTGT GCACAAGTGT TTGTTTCTTT CCCCTGCCCC ACATCCCTTC
  CTTTATTTGG GACACCAACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38124824	NES09276614	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G
ss146739050	ENSMUSSNP76293	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27971695					SNP	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38124824	NES09276614	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70935341 () rs orientation: forward

Symbol	Name	Function Class
Rr397033	regulatory region 397033	1352 bp downstream
Rr558671	regulatory region 558671	1377 bp distal
Rr558672	regulatory region 558672	520 bp distal
Rr558673	regulatory region 558673	within coordinates