rs27971713 SNP Detail

Summary

• ID
  rs27971713
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70933714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGGCAGG GGTGGCAATT
  GTTAAATATC TTACAGCCTG TCTTATTTAA TGCTTCTGAG ATGCTCTGAA GTGAGAAGGT
  TTGCAGTGTT TCAGAAATCA TAAACACACA ACATACACAT TAAATCTATT CTGCCTAGAA
  GAGTGGAGAT AGTAACCAAT GGGATGAAAT TGTAGAACCA TGGAGTTGTT AAAGAATTGA
  R
  ACCCAGTTTA AGTCTCTTTG AAAATGAAGG CTCTGAGGTA TAGGCTCATA CAGGGAGGCC
  AAGATCTTAC AGCGAAGGCT GTGTTGATTC TTGGACCCAC TAAGTCCCTC ACTGCCTGTT
  TGAGGAAGTG AAATTTGTAC CTCTGATTGT GCTGTCGACA GCTGCATTTG CGCCACACTG
  AGAGCTGTGT CGTTGCTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss38124842	NES09276780	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	G	G	A	G	G		G	G		A
ss320335429	CHEV_2_70941427	CHEVERUD	SCREENING_POP	f	SNP											G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs27971713					SNP	A	G	G	A	A	G	G	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38124842	NES09276780	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70933714 () rs orientation: forward

Symbol	Name	Function Class
Rr397033	regulatory region 397033	within coordinates
Rr558671	regulatory region 558671	39 bp proximal
Rr558672	regulatory region 558672	1086 bp proximal
Rr558673	regulatory region 558673	1388 bp proximal