rs27971838 SNP Detail

Summary

• ID
  rs27971838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70912977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAA GAGAACAGAA CCAGATGGAG
  Y
  TCACAGTGTT GGCGCTGAGA TGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38124968	NES09277768	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C		C	T	C	T		C	C	C	C		C
ss45251915	mCV25085183	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		T
ss146738581	ENSMUSSNP5516151	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
ss320335255	CHEV_2_70920690	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27971838					SNP	T	T	C	C	T	T	C	T	C	T	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38124968	NES09277768	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70912977 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dcaf17	DDB1 and CUL4 associated factor 17			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr558667	regulatory region 558667			885 bp proximal
Tssr18238	transcription start site region 18238			1536 bp upstream