rs27972338 SNP Detail

Summary

• ID
  rs27972338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:67729131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGAGGG GAAAGGTTAG
  CAAAAGAAAA TAATAGCATC AGGCTAGTCA GTGATCATTG GCTTGCCAAG TGTAATCTTT
  CTTTGGCAAT CTACTTCAGA AGAAGAGGTT ATTAACGTAT TTGCTTATTT TGTAGCAGTT
  GGGAGATCTT AAGGTGGAAG TATGGTGCTA TTTAATTCAT TCAAACAGAT TGGAAGATGC
  Y
  GAAGCTCCTA AATTCTGGAG TGGCCAAGTA AAGACTCTCA AACCCGTATA TCTTGGTCTG
  GATTCATTCT TATTTTCTGT CCTGAATGTC TGACTCAGAG GACCTCTCAC TGTGTTATCC
  TCCTGACATC CCATACTCTG AAAACCCAAC TGGACACACT GTCCACACTT CAAGGCAGTG
  CTTGTCACTG TCACACTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38137869	NES09297195	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27972338					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38137869	NES09297195	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:67729131 () rs orientation: forward

Symbol	Name	Function Class
B3galt1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	Intron
Gm37964	predicted gene, 37964	within coordinates
Rr558231	regulatory region 558231	94 bp distal