rs27972339 SNP Detail

Summary

• ID
  rs27972339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:67728826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCCAATA CCTCTCACTT
  GCTTTCCCCT AAGCGACCTA TAGTCTCATT GCTTAACTCA ATAATAAAGT TTTGCTGACA
  CAGCCAAAGC TACCTTTTTG TGTGCTTGTG GTAGCTGTTT GGCTTTTCCC CCTTTTCCTT
  GTCTGGCCTC AGCCACCACC ACATGATCCA ATTAGACTCA TAGCCACAGC AGTGGAAAAT
  Y
  AGATACTTGT GTAAATGCAC CCAGCAAACT GAATTGAATC GACCTAGTTC TGAAACCATT
  CATTCACTGG CAGGCTTAAG GAGCTCCTCA GTCCTTTGAG AAGAAAATGG AGGGGAAAGG
  TTAGCAAAAG AAAATAATAG CATCAGGCTA GTCAGTGATC ATTGGCTTGC CAAGTGTAAT
  CTTTCTTTGG CAATCTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38137870	NES09297194	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27972339					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38137870	NES09297194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:67728826 () rs orientation: forward

Symbol	Name	Function Class
B3galt1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	within coordinates
Gm37964	predicted gene, 37964	114 bp upstream