rs27972340 SNP Detail

Summary

• ID
  rs27972340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:67728782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGCCAA AAGTGTGTAT
  ATGGGGGCAG GGGATATTTT ATGATTACCC AATACCTCTC ACTTGCTTTC CCCTAAGCGA
  CCTATAGTCT CATTGCTTAA CTCAATAATA AAGTTTTGCT GACACAGCCA AAGCTACCTT
  TTTGTGTGCT TGTGGTAGCT GTTTGGCTTT TCCCCCTTTT CCTTGTCTGG CCTCAGCCAC
  Y
  ACCACATGAT CCAATTAGAC TCATAGCCAC AGCAGTGGAA AATCAGATAC TTGTGTAAAT
  GCACCCAGCA AACTGAATTG AATCGACCTA GTTCTGAAAC CATTCATTCA CTGGCAGGCT
  TAAGGAGCTC CTCAGTCCTT TGAGAAGAAA ATGGAGGGGA AAGGTTAGCA AAAGAAAATA
  ATAGCATCAG GCTAGTCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38137871	NES09297193	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27972340					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38137871	NES09297193	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:67728782 () rs orientation: forward

Symbol	Name	Function Class
B3galt1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	within coordinates
Gm37964	predicted gene, 37964	158 bp upstream