rs27972348 SNP Detail

Summary

• ID
  rs27972348
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:67728107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCCTCA GGGAGGGGGG
  GGGAAGGTTA TGTGGACAAG ACATAACACT TAACAGTCGA ATTATGAGTT CAGAAACAGA
  GTGCCATGGA CATTGTCACC CATTGAGCAC TAGTTCCATA AGAGATGGGT TGTCAACATG
  GCTGAGCATC TTCAGTAACC ACAGATGTGT TGAAATTATT CTACCCTTGG CCACTGCCAA
  Y
  AAAATTAATA GTTAGTGTGT GGGCTTTAGG GAAATGTCTA CTTACCCCCA AGAGAATGTT
  TCACAACTCC TGAAGGGAAA GTTCTCAGTG ACTTATGGGT AAACGACATC TTCATGGATA
  GGATTTAGTA GTGAAGAATT CTCAATCCTT TTCTGAAAAC TCATAATGAT AAGCAGGAGG
  AAAGCTTTGC ATTTCTATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38137879	NES09297182	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27972348					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38137879	NES09297182	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:67728107 () rs orientation: forward

Symbol	Name	Function Class
B3galt1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	within coordinates
Gm37964	predicted gene, 37964	833 bp upstream
Rr558231	regulatory region 558231	328 bp proximal