rs27973250 SNP Detail

Summary

• ID
  rs27973250
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:68397516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATTAAG TGATTAAACA
  TTCAAAGCAT TTTCTTTTTT TAATTGAAAA GGTCACAAGC GATCACATTT AAAAGGAACT
  TGAGTCTGAG AGGCAGGCTC TGCCTTGAAG GTGATTAGAA GGGCTTGTCC CACAGAGATG
  GAAAGTGGAG CATTGCAGGC AGGACAACAG GATGATGCTG ATCAAGGAGA ATCTCATTCC
  R
  AAATTCTAAG GCTGAAAGAA TTTCCCAAGT GAGGAGTTAA AGAGGGCAGG AGCTGGTTAG
  CAACTCCACA GGATTCCATC AGATTCCCTG TCACTGGCTA ACAAGAAGTT TGGGAGTCCT
  CAGAATATGC AACTCAGAAA AGAGCAGCAG GCTTCCTCTG CCCCCAGCCC TCATGATGCT
  CACAATGGTC TCTCAGTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38134875	NES09286929	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27973250					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38134875	NES09286929	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68397516 () rs orientation: forward

Symbol	Name	Function Class
Gm49461	predicted gene, 49461	1670 bp upstream
Gm49462	predicted gene, 49462	within coordinates
Gm74865	predicted gene, 74865	within coordinates
Gm74875	predicted gene, 74875	1555 bp upstream
Tssr18024	transcription start site region 18024	1496 bp downstream
Tssr18025	transcription start site region 18025	1390 bp upstream
Tssr18026	transcription start site region 18026	1405 bp upstream
Tssr18027	transcription start site region 18027	1420 bp upstream
Tssr24417	transcription start site region 24417	1785 bp upstream
Tssr24418	transcription start site region 24418	1774 bp upstream
Tssr24419	transcription start site region 24419	1755 bp upstream