rs27973252 SNP Detail

Summary

• ID
  rs27973252
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:68396224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGGTGAG GTGGCAGGGA
  TGGCCATTTT ACTGCCTTGA AGGTGTACAA AGTTTACAAA GTTTACAAAG GGAGTCCACA
  GAAGGGAAAG CCTTTCCTGC CGCTTGAGTG GCTTGAATAT CCCATAGTAG AAGTTTGTGA
  TACACAGCAC CCTGCAGGTC TAAGCCTCTT CTGCCTGGCC TGAGCATAAT AACATAAGCC
  Y
  TGTGTTACTA AAGCTGGCAA CCTCCACCTT CAGTGGCTGC AGCAGACACA CACAACTGTT
  TAGCCCCAGT GGACTGCATC CAGCATTCAG CTATGAGAGG CAGTGGAAGG CCATTGGTGA
  AAGTGCAGCC TCAGTTGCAG TTGATGGCCC AGGACTGAAT TGGTCATGAG AAGGAGTTGA
  GGCTTGGCAC CATGAAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38134877	NES09286954	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27973252					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38134877	NES09286954	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68396224 () rs orientation: forward

Symbol	Name	Function Class
Gm49462	predicted gene, 49462	within coordinates
Gm74865	predicted gene, 74865	within coordinates
Gm74875	predicted gene, 74875	263 bp upstream
Tssr18024	transcription start site region 18024	204 bp downstream
Tssr24417	transcription start site region 24417	493 bp upstream
Tssr24418	transcription start site region 24418	482 bp upstream
Tssr24419	transcription start site region 24419	463 bp upstream