rs27975762 SNP Detail

Summary

• ID
  rs27975762
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78437487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTTTTAT AGGACAAGCA
  GATTCTGAAG TCGCTGTTTT ACACACCATG GTGTGACCTA AAGTAGAGCA TTGCCTGGTC
  TCCACAAACC TCCCTTTTGG CCACTTGCTC CTCCTCAGTT TCCTTTCAGG CTTTTCTGTG
  CTATGCCGAA TGTTCTATAG TCCTTAAATC TATTTGCAAT ACTGTCAATA ATATGACCAT
  Y
  TCAGCTATTC CTCAACTCCT CTCAAGCATT TCTTCGTGAC ACAGTAAGTA GGTAGTTCAT
  GTGCCCTTTG CATGTGAAAT GTCCCTGAAA GTGGTGTGCT TTCAAGATTT GCTCTCTATA
  GTTGTTCAGA GGTGGGGTTT GGCTGATGTG ACTGGCCCCT AAGGTCTCTG ACTTAATCAG
  TGGACTGACT TATGAGTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38096287	NES09264700	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27975762					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38096287	NES09264700	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78437487 () rs orientation: forward

Symbol	Name	Function Class
Rr559876	regulatory region 559876	415 bp distal