rs27977163 SNP Detail

Summary

• ID
  rs27977163
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76801471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCTGAAGG TCCAGTAATA TCTTCTTTAA AATACAGAAT
  AATTTTGCAG AATATTACAT CAGCCTATTT CATCAAGAAA CATTTAATCA TTTTCTTGTG
  M
  AAGGCCGTGT GGGGAAAAAA ACCCAATTTA CATTTTAGGA AAGAAATTGT AATCAAAGCT
  GAAGGGTGGG CTAACAAATA TGGCTCTACC GTAAAAAGAA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	PWD/PhJ
ss38103186	NES09261278	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	PWD/PhJ
rs27977163					SNP	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103186	NES09261278	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76801471 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	1995 bp distal
Rr559724	regulatory region 559724	within coordinates
Rr559725	regulatory region 559725	204 bp distal
Tssr24823	transcription start site region 24823	1940 bp upstream
Tssr24824	transcription start site region 24824	1901 bp upstream
Tssr24825	transcription start site region 24825	1446 bp upstream
Tssr24826	transcription start site region 24826	1406 bp upstream
Tssr24827	transcription start site region 24827	1385 bp upstream
Tssr24828	transcription start site region 24828	1302 bp upstream
Tssr24829	transcription start site region 24829	1190 bp upstream
Ttn	titin	within coordinates