rs27977166 SNP Detail

Summary

• ID
  rs27977166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76801269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TATGCAAAAT
  GCAAATAGGA GCTATCAAAG GCTGTGGGCA CTGAACGCTG ACAATGGTAG CCCAAAAGCT
  AGATTGTTAT CGTTAGCAAT CATACTAAGT ACAGATCAGC TATCTGAACA TAATAGGTTT
  TTCAAGATTA ATTTTCAATT AATTTGTTTT TCCCTATTTT ACCTCTTGGT GGCAGTGTTG
  Y
  TTTACAAATT CTTCACACGG GGCCATGTTT ATCAGTGTAT TCCGGCACTT GCTTAGGGTA
  TTTAGTTTAC ATCAATCATA AATAAAACAA TTCTCCCAAT TAAGCTGAAG GTCCAGTAAT
  ATCTTCTTTA AAATACAGAA TAATTTTGCA GAATATTACA TCAGCCTATT TCATCAAGAA
  ACATTTAATC ATTTTCTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38103189	NES09261275	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27977166					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103189	NES09261275	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76801269 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	1793 bp distal
Rr559724	regulatory region 559724	within coordinates
Rr559725	regulatory region 559725	2 bp distal
Tssr24823	transcription start site region 24823	1738 bp upstream
Tssr24824	transcription start site region 24824	1699 bp upstream
Tssr24825	transcription start site region 24825	1244 bp upstream
Tssr24826	transcription start site region 24826	1204 bp upstream
Tssr24827	transcription start site region 24827	1183 bp upstream
Tssr24828	transcription start site region 24828	1100 bp upstream
Tssr24829	transcription start site region 24829	988 bp upstream
Ttn	titin	within coordinates