rs27977170 SNP Detail

Summary

• ID
  rs27977170
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76800634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG CTTCAGTTGG GCATGAGAGA
  M
  TATTTTGTGG GTGTTACATG GTTTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38103193	NES09261271	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	C	C	C	C	A	A		C	A	A	C		A
ss146777266	ENSMUSSNP3686278	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
ss320356660	CHEV_2_76808347	CHEVERUD	SCREENING_POP	f	SNP										A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27977170					SNP	A	C	A	C	C	C	C	A	A	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103193	NES09261271	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76800634 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	1158 bp distal
Rr559724	regulatory region 559724	within coordinates
Rr559725	regulatory region 559725	612 bp proximal
Tssr18508	transcription start site region 18508	1819 bp downstream
Tssr24820	transcription start site region 24820	1820 bp upstream
Tssr24821	transcription start site region 24821	1788 bp upstream
Tssr24822	transcription start site region 24822	1758 bp upstream
Tssr24823	transcription start site region 24823	1103 bp upstream
Tssr24824	transcription start site region 24824	1064 bp upstream
Tssr24825	transcription start site region 24825	609 bp upstream
Tssr24826	transcription start site region 24826	569 bp upstream
Tssr24827	transcription start site region 24827	548 bp upstream
Tssr24828	transcription start site region 24828	465 bp upstream
Tssr24829	transcription start site region 24829	353 bp upstream
Ttn	titin	within coordinates