rs27977171 SNP Detail

Summary

• ID
  rs27977171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76800586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAA AAGTAACTCC CTTAAAACAT
  Y
  GCCACAGAAA GGACAGTGTG TTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38103194	NES09261270	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C	C	C	T	T		C	T	T	C		T
ss146777263	ENSMUSSNP6637219	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
ss320356659	CHEV_2_76808299	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27977171					SNP	T	C	T	C	C	C	C	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103194	NES09261270	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76800586 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	1110 bp distal
Rr559724	regulatory region 559724	within coordinates
Rr559725	regulatory region 559725	660 bp proximal
Tssr18508	transcription start site region 18508	1771 bp downstream
Tssr24820	transcription start site region 24820	1772 bp upstream
Tssr24821	transcription start site region 24821	1740 bp upstream
Tssr24822	transcription start site region 24822	1710 bp upstream
Tssr24823	transcription start site region 24823	1055 bp upstream
Tssr24824	transcription start site region 24824	1016 bp upstream
Tssr24825	transcription start site region 24825	561 bp upstream
Tssr24826	transcription start site region 24826	521 bp upstream
Tssr24827	transcription start site region 24827	500 bp upstream
Tssr24828	transcription start site region 24828	417 bp upstream
Tssr24829	transcription start site region 24829	305 bp upstream
Ttn	titin	within coordinates