rs27977173 SNP Detail

Summary

• ID
  rs27977173
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76800324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCTCTCTC ATCTCAGCCT
  CAGTCGAGGA GGCCACGTAG CCCTCTTGCT TCCAAGGGGG AGGCACCTCG GGGCCTGTGG
  CCATGGTGGT GGTCTGAGTC TTGCGAATGA GCAGTGGCGA CTTCACGGAT CTGATCGGGG
  AAGTGGAGAT CCTCCCCGCT GGAGACACGG ACCTGGAAAC CCAGCGGCAG AGGTCAGAGC
  R
  TGGGGCAAGG CACCCCAGCA GGTGTGGTGC GGATTAGATG GTGGAATGGA AATTTGGCAG
  CACTTTAAGG TGCGGCGTTA AAATGTGAGT TTCCATAACC TATCTCGAGG GTACATCACG
  AACCTGAAGC CAATTTGTTT TAAATATCAA TAAGCCCCAC ATTTACTTAA TTCTAAGTAA
  GCTAAAGATC TGTGTGCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38103196	NES09261268	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27977173					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103196	NES09261268	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76800324 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	848 bp distal
Rr559724	regulatory region 559724	200 bp proximal
Rr559725	regulatory region 559725	922 bp proximal
Tssr18508	transcription start site region 18508	1509 bp downstream
Tssr24820	transcription start site region 24820	1510 bp upstream
Tssr24821	transcription start site region 24821	1478 bp upstream
Tssr24822	transcription start site region 24822	1448 bp upstream
Tssr24823	transcription start site region 24823	793 bp upstream
Tssr24824	transcription start site region 24824	754 bp upstream
Tssr24825	transcription start site region 24825	299 bp upstream
Tssr24826	transcription start site region 24826	259 bp upstream
Tssr24827	transcription start site region 24827	238 bp upstream
Tssr24828	transcription start site region 24828	155 bp upstream
Tssr24829	transcription start site region 24829	43 bp upstream
Ttn	titin	within coordinates