rs27977176 SNP Detail

Summary

• ID
  rs27977176
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76800250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCGA ATGAGCAGTG GCGACTTCAC
  R
  GATCTGATCG GGGAAGTGGA GATCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38103199	NES09261265	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	G	G		G	A	A		G	A	A	G		A
ss45225620	mCV25008215	ABI	CRAMUS_MOUSE	f	SNP		A	G					G	G
ss146777254	ENSMUSSNP6459929	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss320356653	CHEV_2_76807963	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27977176					SNP	A	A	G	A	G	G	G	G	G	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103199	NES09261265	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76800250 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	774 bp distal
Rr559724	regulatory region 559724	274 bp proximal
Rr559725	regulatory region 559725	996 bp proximal
Tssr18508	transcription start site region 18508	1435 bp downstream
Tssr24820	transcription start site region 24820	1436 bp upstream
Tssr24821	transcription start site region 24821	1404 bp upstream
Tssr24822	transcription start site region 24822	1374 bp upstream
Tssr24823	transcription start site region 24823	719 bp upstream
Tssr24824	transcription start site region 24824	680 bp upstream
Tssr24825	transcription start site region 24825	225 bp upstream
Tssr24826	transcription start site region 24826	185 bp upstream
Tssr24827	transcription start site region 24827	164 bp upstream
Tssr24828	transcription start site region 24828	81 bp upstream
Tssr24829	transcription start site region 24829	19 bp downstream
Ttn	titin	within coordinates