rs27977178 SNP Detail

Summary

• ID
  rs27977178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76800223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCAGCAG CCGCGGCTCC
  ACTGATGGTC ACTTGCTCCT GGACCCCGTA TCTCCCTTCC CACCTCTCTT CTCTTCTGAT
  CTGGGTAGAG CTTGTCATTG TCGTCTCTCT CATCTCAGCC TCAGTCGAGG AGGCCACGTA
  GCCCTCTTGC TTCCAAGGGG GAGGCACCTC GGGGCCTGTG GCCATGGTGG TGGTCTGAGT
  Y
  TTGCGAATGA GCAGTGGCGA CTTCACGGAT CTGATCGGGG AAGTGGAGAT CCTCCCCGCT
  GGAGACACGG ACCTGGAAAC CCAGCGGCAG AGGTCAGAGC GTGGGGCAAG GCACCCCAGC
  AGGTGTGGTG CGGATTAGAT GGTGGAATGG AAATTTGGCA GCACTTTAAG GTGCGGCGTT
  AAAATGTGAG TTTCCATAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38103201	NES09261263	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27977178					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103201	NES09261263	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76800223 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	747 bp distal
Rr559724	regulatory region 559724	301 bp proximal
Rr559725	regulatory region 559725	1023 bp proximal
Tssr18508	transcription start site region 18508	1408 bp downstream
Tssr24820	transcription start site region 24820	1409 bp upstream
Tssr24821	transcription start site region 24821	1377 bp upstream
Tssr24822	transcription start site region 24822	1347 bp upstream
Tssr24823	transcription start site region 24823	692 bp upstream
Tssr24824	transcription start site region 24824	653 bp upstream
Tssr24825	transcription start site region 24825	198 bp upstream
Tssr24826	transcription start site region 24826	158 bp upstream
Tssr24827	transcription start site region 24827	137 bp upstream
Tssr24828	transcription start site region 24828	54 bp upstream
Tssr24829	transcription start site region 24829	46 bp downstream
Ttn	titin	within coordinates