rs27977179 SNP Detail

Summary

• ID
  rs27977179
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76799952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGACAAG GCCAGCACCA
  TTAAAATTCA TACATTATGC CAGCCTCACA GATTAGTCTT TGACTCAAAA AAGATGCTTT
  GATAAAGGAC AACCATATTG ATTGTAGTTT TAGGCTCCTA TGCATTTCCT CTCTAACCTG
  TGCAGTCCAT GCCTGAAACT GGATCAGAGG AACCAGAAGA TGAAATGGAG AAAGGAAAGG
  R
  TTCTGACGGT ACCTCCTTAG TCCCAGTGGT GATGGCTCCT GCCGTGAATG ACGAGCTGAC
  CGACGCACTG GCCGCAGCAG CCGCGGCTCC ACTGATGGTC ACTTGCTCCT GGACCCCGTA
  TCTCCCTTCC CACCTCTCTT CTCTTCTGAT CTGGGTAGAG CTTGTCATTG TCGTCTCTCT
  CATCTCAGCC TCAGTCGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38103202	NES09261262	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27977179					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103202	NES09261262	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76799952 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	476 bp distal
Rr559724	regulatory region 559724	572 bp proximal
Rr559725	regulatory region 559725	1294 bp proximal
Tssr18508	transcription start site region 18508	1137 bp downstream
Tssr24820	transcription start site region 24820	1138 bp upstream
Tssr24821	transcription start site region 24821	1106 bp upstream
Tssr24822	transcription start site region 24822	1076 bp upstream
Tssr24823	transcription start site region 24823	421 bp upstream
Tssr24824	transcription start site region 24824	382 bp upstream
Tssr24825	transcription start site region 24825	48 bp downstream
Tssr24826	transcription start site region 24826	100 bp downstream
Tssr24827	transcription start site region 24827	117 bp downstream
Tssr24828	transcription start site region 24828	205 bp downstream
Tssr24829	transcription start site region 24829	317 bp downstream
Ttn	titin	within coordinates