rs27977180 SNP Detail

Summary

• ID
  rs27977180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:76799449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACT AAGAGCAGAG TTGAGCCGGG
  R
  CCGTTCTAGC ACCCCCTGGT GGCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38103203	NES09261261	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	G	G	A	A		G	A	A	G		A
ss146777239	ENSMUSSNP3310015	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320356650	CHEV_2_76807162	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27977180					SNP	A	G	A	G	G	G	G	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103203	NES09261261	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76799449 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	6 bp proximal
Rr559724	regulatory region 559724	1075 bp proximal
Rr559725	regulatory region 559725	1797 bp proximal
Tssr18508	transcription start site region 18508	634 bp downstream
Tssr24819	transcription start site region 24819	2000 bp upstream
Tssr24820	transcription start site region 24820	635 bp upstream
Tssr24821	transcription start site region 24821	603 bp upstream
Tssr24822	transcription start site region 24822	573 bp upstream
Tssr24823	transcription start site region 24823	59 bp downstream
Tssr24824	transcription start site region 24824	86 bp downstream
Tssr24825	transcription start site region 24825	551 bp downstream
Tssr24826	transcription start site region 24826	603 bp downstream
Tssr24827	transcription start site region 24827	620 bp downstream
Tssr24828	transcription start site region 24828	708 bp downstream
Tssr24829	transcription start site region 24829	820 bp downstream
Ttn	titin	Intron