CAGGG GATTTGTATG TCCAATTACT R AGAGCAGAGT TGAGCCGGGG CCGTT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss38103204 | NES09261260 | PERLEGEN | MM_PANEL2 | f | SNP | G | A | G | A | A | A | A | G | G | G | G | G | G | G | |||
ss45232010 | mCV25008027 | ABI | CRAMUS_MOUSE | f | SNP | G | A | A | ||||||||||||||
ss146777236 | ENSMUSSNP6196776 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | ||||||||||||||||
ss320356649 | CHEV_2_76807142 | CHEVERUD | SCREENING_POP | f | SNP | G | A | |||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
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rs27977181 | SNP | G | A | G | A | A | A | A | A | G | G | G | G | G | G | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss38103204 | NES09261260 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr2:76799429 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr559723 | regulatory region 559723 | 26 bp proximal | ||||||
Rr559724 | regulatory region 559724 | 1095 bp proximal | ||||||
Rr559725 | regulatory region 559725 | 1817 bp proximal | ||||||
Tssr18508 | transcription start site region 18508 | 614 bp downstream | ||||||
Tssr24819 | transcription start site region 24819 | 1980 bp upstream | ||||||
Tssr24820 | transcription start site region 24820 | 615 bp upstream | ||||||
Tssr24821 | transcription start site region 24821 | 583 bp upstream | ||||||
Tssr24822 | transcription start site region 24822 | 553 bp upstream | ||||||
Tssr24823 | transcription start site region 24823 | 79 bp downstream | ||||||
Tssr24824 | transcription start site region 24824 | 106 bp downstream | ||||||
Tssr24825 | transcription start site region 24825 | 571 bp downstream | ||||||
Tssr24826 | transcription start site region 24826 | 623 bp downstream | ||||||
Tssr24827 | transcription start site region 24827 | 640 bp downstream | ||||||
Tssr24828 | transcription start site region 24828 | 728 bp downstream | ||||||
Tssr24829 | transcription start site region 24829 | 840 bp downstream | ||||||
Ttn | titin | within coordinates |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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