rs27977184 SNP Detail

Summary

• ID
  rs27977184
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76799044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTACTGC GGTCTTCTCC
  GCCTCTTTTC TCGCCTGATT TTCATTGACA AAAGAAAGGA GCCATTTCAG TCCACACCAC
  TTGGAAGTGT ACGCTGCTAC ATCAGGACCA AGCGGTAACA ATCAACCCAC AGGACAGGGA
  GGAGAGTGAG AGAGCTTTTA GACTAACAGA GCCTGTTTAC ACATGAGGTG GCCTTGCATT
  Y
  ATATTGCTTT GCAGCCGAGA ATCAAAATGT CACATTTGTT TTGAGGAAAG TAAAAGCCGT
  GGTCCTTCCG GGAACTTAGA GAAATCTAAT GCCAACCCTT GAAAATGTAG CTTCCACAAC
  TAGCTATGGA AATCTGCACT CAGATTTGAC CTGCCTTTTG TTTCATGTCT GCCAGGCTCC
  CACAGTCCCT GGATGCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38103207	NES09261257	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27977184					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103207	NES09261257	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76799044 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	411 bp proximal
Rr559724	regulatory region 559724	1480 bp proximal
Tssr18508	transcription start site region 18508	229 bp downstream
Tssr24819	transcription start site region 24819	1595 bp upstream
Tssr24820	transcription start site region 24820	230 bp upstream
Tssr24821	transcription start site region 24821	198 bp upstream
Tssr24822	transcription start site region 24822	168 bp upstream
Tssr24823	transcription start site region 24823	464 bp downstream
Tssr24824	transcription start site region 24824	491 bp downstream
Tssr24825	transcription start site region 24825	956 bp downstream
Tssr24826	transcription start site region 24826	1008 bp downstream
Tssr24827	transcription start site region 24827	1025 bp downstream
Tssr24828	transcription start site region 24828	1113 bp downstream
Tssr24829	transcription start site region 24829	1225 bp downstream
Ttn	titin	within coordinates