rs27977186 SNP Detail

Summary

• ID
  rs27977186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76798234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTACTA TCTTGGTCAA
  TGTATTGCTC CAATCCTGAG CCATGGAAGG ATGTTTCACT TCCATTTGAT GTCTAAAGAG
  TAAGTCCTTC CCATCCTTGG GTATCTTATC ACTGAACCTC AGGACCACAG GGCAGAAAGG
  GACTTGAAAA TTAATTTTCT CAAATTATCC TATAATCAAC TGTCTCCCCT GACCAACAGT
  Y
  CTACCAACAG GCCTTCTCCC ATCTGTCCAC AAGTGCTTTT TAGTCCAACC TCTCACTATT
  CAACCTACTA CATGTAGGTA TGTATGTCAT ACATCCTATA TGAAACCCAT GTGCTAATGT
  CCAAGGGGTC AGGAAGCGGC ACCAAGCTTT TAATGTAGCA TATTCTGTTT TCCCTTACAT
  TCTTGCCTGT TTCATCCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38103209	NES09261255	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27977186					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103209	NES09261255	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76798234 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	1221 bp proximal
Tssr18508	transcription start site region 18508	557 bp upstream
Tssr24819	transcription start site region 24819	785 bp upstream
Tssr24820	transcription start site region 24820	567 bp downstream
Tssr24821	transcription start site region 24821	586 bp downstream
Tssr24822	transcription start site region 24822	613 bp downstream
Tssr24823	transcription start site region 24823	1274 bp downstream
Tssr24824	transcription start site region 24824	1301 bp downstream
Tssr24825	transcription start site region 24825	1766 bp downstream
Tssr24826	transcription start site region 24826	1818 bp downstream
Tssr24827	transcription start site region 24827	1835 bp downstream
Tssr24828	transcription start site region 24828	1923 bp downstream
Ttn	titin	within coordinates