rs27977187 SNP Detail

Summary

• ID
  rs27977187
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76798059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTTGTCTT TTTTTTTTTT AAACATACAA TAATGGTTTT
  GAATATCAAG GCTTGTCTAA AATGGAGACA CAATTTTGGT TACTATCTTG GTCAATGTAT
  K
  GCTCCAATCC TGAGCCATGG AAGGATGTTT CACTTCCATT TGATGTCTAA AGAGTAAGTC
  CTTCCCATCC TTGGGTATCT TATCACTGAA CCTCAGGACC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38103210	NES09261254	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27977187					SNP	T	T	T	T	T	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103210	NES09261254	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76798059 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	1396 bp proximal
Tssr18508	transcription start site region 18508	732 bp upstream
Tssr24819	transcription start site region 24819	610 bp upstream
Tssr24820	transcription start site region 24820	742 bp downstream
Tssr24821	transcription start site region 24821	761 bp downstream
Tssr24822	transcription start site region 24822	788 bp downstream
Tssr24823	transcription start site region 24823	1449 bp downstream
Tssr24824	transcription start site region 24824	1476 bp downstream
Tssr24825	transcription start site region 24825	1941 bp downstream
Tssr24826	transcription start site region 24826	1993 bp downstream
Ttn	titin	within coordinates