rs27977188 SNP Detail

Summary

• ID
  rs27977188
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:76798037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGCCAAA AGTAATCTTA
  CACCTCAGAA TATTACTACG GAAGTCTCAA GGAGTAATTT TGCCTGGCTC CTTACTTTAA
  TGTGAAAATC CAAGCATAAT TTACAGTCTG CCTTCCTACT CTATTTTGTC TTTTTTTTTT
  TTAAACATAC AATAATGGTT TTGAATATCA AGGCTTGTCT AAAATGGAGA CACAATTTTG
  K
  TTACTATCTT GGTCAATGTA TTGCTCCAAT CCTGAGCCAT GGAAGGATGT TTCACTTCCA
  TTTGATGTCT AAAGAGTAAG TCCTTCCCAT CCTTGGGTAT CTTATCACTG AACCTCAGGA
  CCACAGGGCA GAAAGGGACT TGAAAATTAA TTTTCTCAAA TTATCCTATA ATCAACTGTC
  TCCCCTGACC AACAGTTCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38103211	NES09261252	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27977188					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103211	NES09261252	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76798037 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	1418 bp proximal
Tssr18508	transcription start site region 18508	754 bp upstream
Tssr24819	transcription start site region 24819	588 bp upstream
Tssr24820	transcription start site region 24820	764 bp downstream
Tssr24821	transcription start site region 24821	783 bp downstream
Tssr24822	transcription start site region 24822	810 bp downstream
Tssr24823	transcription start site region 24823	1471 bp downstream
Tssr24824	transcription start site region 24824	1498 bp downstream
Tssr24825	transcription start site region 24825	1963 bp downstream
Ttn	titin	Intron