rs27977189 SNP Detail

Summary

• ID
  rs27977189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76797836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGATATC GTTAATTAAA
  TCTTCACATC TTAATTAATA CGAGCACATT TGTTTGCTCT CTGAACCATG CATTAGTCTC
  TTTAGGGGAA ATGGAATGTC GGACTCAGGA CTGCTTGTTT TACAGACAGT GGCTACCTAC
  CTTAGCAAGA TTTGTGCCTT CTATAGGTGG TCATATGGTA ATTTAATTAG GTGCTAATTC
  Y
  ATCAGCCAAA AGTAATCTTA CACCTCAGAA TATTACTACG GAAGTCTCAA GGAGTAATTT
  TGCCTGGCTC CTTACTTTAA TGTGAAAATC CAAGCATAAT TTACAGTCTG CCTTCCTACT
  CTATTTTGTC TTTTTTTTTT TTAAACATAC AATAATGGTT TTGAATATCA AGGCTTGTCT
  AAAATGGAGA CACAATTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38103212	NES09261250	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		C	T	T	C		T
ss320356646	CHEV_2_76805549	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27977189					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103212	NES09261250	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76797836 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	1619 bp proximal
Tssr18508	transcription start site region 18508	955 bp upstream
Tssr24819	transcription start site region 24819	387 bp upstream
Tssr24820	transcription start site region 24820	965 bp downstream
Tssr24821	transcription start site region 24821	984 bp downstream
Tssr24822	transcription start site region 24822	1011 bp downstream
Tssr24823	transcription start site region 24823	1672 bp downstream
Tssr24824	transcription start site region 24824	1699 bp downstream
Ttn	titin	within coordinates