rs27977190 SNP Detail

Summary

• ID
  rs27977190
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76797721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTTATC TGCAATCAAT
  GAATAAAAAC AGGACCTTAT TGTTTCCAAA TCTACAATGG GGCTAACCCA GCATCAGATC
  CAACAAAGTA GGAAATCGAG AGAGTGAACC TCCCTTTCTG ATATCGTTAA TTAAATCTTC
  ACATCTTAAT TAATACGAGC ACATTTGTTT GCTCTCTGAA CCATGCATTA GTCTCTTTAG
  R
  GGAAATGGAA TGTCGGACTC AGGACTGCTT GTTTTACAGA CAGTGGCTAC CTACCTTAGC
  AAGATTTGTG CCTTCTATAG GTGGTCATAT GGTAATTTAA TTAGGTGCTA ATTCTATCAG
  CCAAAAGTAA TCTTACACCT CAGAATATTA CTACGGAAGT CTCAAGGAGT AATTTTGCCT
  GGCTCCTTAC TTTAATGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38103213	NES09261248	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G		G	G	A		G
ss320356645	CHEV_2_76805434	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27977190					SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103213	NES09261248	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76797721 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	1734 bp proximal
Tssr18508	transcription start site region 18508	1070 bp upstream
Tssr24819	transcription start site region 24819	272 bp upstream
Tssr24820	transcription start site region 24820	1080 bp downstream
Tssr24821	transcription start site region 24821	1099 bp downstream
Tssr24822	transcription start site region 24822	1126 bp downstream
Tssr24823	transcription start site region 24823	1787 bp downstream
Tssr24824	transcription start site region 24824	1814 bp downstream
Ttn	titin	within coordinates