rs27977191 SNP Detail

Summary

• ID
  rs27977191
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76797616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGCTCT TGTTTTGTAG
  TAATTTCTCC CGTGATTCTA GTTTCTTGCT CTTTGGCTTT GGTTGCGGAG ATCACTACCT
  TTGGTACAAA TGCTTTTTCA GTTTCTTTTC TTATCTGCAA TCAATGAATA AAAACAGGAC
  CTTATTGTTT CCAAATCTAC AATGGGGCTA ACCCAGCATC AGATCCAACA AAGTAGGAAA
  W
  CGAGAGAGTG AACCTCCCTT TCTGATATCG TTAATTAAAT CTTCACATCT TAATTAATAC
  GAGCACATTT GTTTGCTCTC TGAACCATGC ATTAGTCTCT TTAGGGGAAA TGGAATGTCG
  GACTCAGGAC TGCTTGTTTT ACAGACAGTG GCTACCTACC TTAGCAAGAT TTGTGCCTTC
  TATAGGTGGT CATATGGTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38103214	NES09261244	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27977191					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103214	NES09261244	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76797616 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	1839 bp proximal
Tssr18508	transcription start site region 18508	1175 bp upstream
Tssr24819	transcription start site region 24819	167 bp upstream
Tssr24820	transcription start site region 24820	1185 bp downstream
Tssr24821	transcription start site region 24821	1204 bp downstream
Tssr24822	transcription start site region 24822	1231 bp downstream
Tssr24823	transcription start site region 24823	1892 bp downstream
Tssr24824	transcription start site region 24824	1919 bp downstream
Ttn	titin	within coordinates