rs27977192 SNP Detail

Summary

• ID
  rs27977192
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76797446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGTGAAC ACAAAAGAGT
  TCTAACCCTG GACACTGGTC AACAGTAGGA GGAAGAGACA CGAAAGAGAG TCTGGTCTGA
  AGCTCTGGGT ATAATGTACA CACAGCTGAT GACTGGAAAT GAGCCATTTG TAAGGATCAA
  AGCCAGACTT ACTGTTTCTT GAGTTATTCG CTTTTGCTCT TGTTTTGTAG TAATTTCTCC
  Y
  GTGATTCTAG TTTCTTGCTC TTTGGCTTTG GTTGCGGAGA TCACTACCTT TGGTACAAAT
  GCTTTTTCAG TTTCTTTTCT TATCTGCAAT CAATGAATAA AAACAGGACC TTATTGTTTC
  CAAATCTACA ATGGGGCTAA CCCAGCATCA GATCCAACAA AGTAGGAAAT CGAGAGAGTG
  AACCTCCCTT TCTGATATCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38103215	NES09261243	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27977192					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103215	NES09261243	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76797446 () rs orientation: forward

Symbol	Name	Function Class
Tssr18508	transcription start site region 18508	1345 bp upstream
Tssr24819	transcription start site region 24819	within coordinates
Tssr24820	transcription start site region 24820	1355 bp downstream
Tssr24821	transcription start site region 24821	1374 bp downstream
Tssr24822	transcription start site region 24822	1401 bp downstream
Ttn	titin	within coordinates