rs27977193 SNP Detail

Summary

• ID
  rs27977193
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76797338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTC TGGTCTGAAG CTCTGGGTAT
  R
  ATGTACACAC AGCTGATGAC TGGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38103216	NES09261242	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	A	A		A	G	G		A	G	G	A		A
ss45225395	mCV25008017	ABI	CRAMUS_MOUSE	f	SNP		G	A					A	A
ss146777228	ENSMUSSNP6640282	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss320356643	CHEV_2_76805051	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27977193					SNP	G	G	A	G	A	A	A	A	A	G	G	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103216	NES09261242	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76797338 () rs orientation: forward

Symbol	Name	Function Class
Tssr18508	transcription start site region 18508	1453 bp upstream
Tssr24819	transcription start site region 24819	98 bp downstream
Tssr24820	transcription start site region 24820	1463 bp downstream
Tssr24821	transcription start site region 24821	1482 bp downstream
Tssr24822	transcription start site region 24822	1509 bp downstream
Ttn	titin	within coordinates