rs27977197 SNP Detail

Summary

• ID
  rs27977197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76796911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATC ATACATAGGC TATGTCTTCC
  Y
  ATATCCTATA TGTTTACTTC AGTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38103220	NES09261238	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	T	C	C		C	C	C		C
ss45334163	mCV25008016	ABI	CRAMUS_MOUSE	f	SNP		C	T				T
ss146777225	ENSMUSSNP5997267	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T				T
ss320356642	CHEV_2_76804624	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27977197					SNP	C	C	T	C	T	T	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103220	NES09261238	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76796911 () rs orientation: forward

Symbol	Name	Function Class
Tssr18508	transcription start site region 18508	1880 bp upstream
Tssr24819	transcription start site region 24819	525 bp downstream
Tssr24820	transcription start site region 24820	1890 bp downstream
Tssr24821	transcription start site region 24821	1909 bp downstream
Tssr24822	transcription start site region 24822	1936 bp downstream
Ttn	titin	within coordinates