rs27977213 SNP Detail

Summary

• ID
  rs27977213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76793878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACATGGGC TTTCATCCCC
  TCCTCTTGAA AATATATTTG TTCTTCCTTA ATGGCTAGTC CTTCTGTAGT CCTTGGGTTT
  TATTAACAGG GACAAGGAGA TTTCCTCAGC CTCCATTCTT CACTGACAAT CAGCAATGAA
  AACAAGACAG ACATATTTAT GCTAACAGGG ACAGAAAGGA TAATTAACCA TAATTCCTGA
  R
  ATTTGGCTCG TGTTAAAACT TGTTGCATGA GACTTCTAGG AGACAGATGG GCTATTAAAT
  ATTAGTCTTA GATAAAGGTT TGAATCTTAT CTTAAATCTT GTCTTAGAGA AAAAACAATT
  AACAATCTTG TGATAAAAAT CAACACTGAG GGAAACACAA AAACAATGCA AAAATGAAAA
  AAAAAAAAGA AAACCTTAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38103236	NES09261424	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27977213					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103236	NES09261424	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76793878 () rs orientation: forward

Symbol	Name	Function Class
D2Ucl5	DNA segment, Chr 2, University College London 5	386 bp proximal
Tssr24818	transcription start site region 24818	1823 bp upstream
Ttn	titin	within coordinates