rs27977214 SNP Detail

Summary

• ID
  rs27977214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76793849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGATGAA ACAGTGTGTT
  TCACCGCCAC AACATGGGCT TTCATCCCCT CCTCTTGAAA ATATATTTGT TCTTCCTTAA
  TGGCTAGTCC TTCTGTAGTC CTTGGGTTTT ATTAACAGGG ACAAGGAGAT TTCCTCAGCC
  TCCATTCTTC ACTGACAATC AGCAATGAAA ACAAGACAGA CATATTTATG CTAACAGGGA
  Y
  AGAAAGGATA ATTAACCATA ATTCCTGAGA TTTGGCTCGT GTTAAAACTT GTTGCATGAG
  ACTTCTAGGA GACAGATGGG CTATTAAATA TTAGTCTTAG ATAAAGGTTT GAATCTTATC
  TTAAATCTTG TCTTAGAGAA AAAACAATTA ACAATCTTGT GATAAAAATC AACACTGAGG
  GAAACACAAA AACAATGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38103237	NES09261423	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27977214					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103237	NES09261423	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76793849 () rs orientation: forward

Symbol	Name	Function Class
D2Ucl5	DNA segment, Chr 2, University College London 5	415 bp proximal
Tssr24818	transcription start site region 24818	1794 bp upstream
Ttn	titin	within coordinates