rs27977215 SNP Detail

Summary

• ID
  rs27977215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76793683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGTTGTG TGATGTGGTC
  TTTTATAACT AGAAATGCTA ACTATGCCTC TGGAGGTCTC AGGCTGAATC AAATCATCTC
  TCCCATTTGG TTGGCAAGTG AAGCAACTAA ATGGAGCCCT GGGAGCACAT GGGTTCATGA
  CCGATGAGAA GTTACATGAG CTGATGACAA GATGAAACAG TGTGTTTCAC CGCCACAACA
  Y
  GGGCTTTCAT CCCCTCCTCT TGAAAATATA TTTGTTCTTC CTTAATGGCT AGTCCTTCTG
  TAGTCCTTGG GTTTTATTAA CAGGGACAAG GAGATTTCCT CAGCCTCCAT TCTTCACTGA
  CAATCAGCAA TGAAAACAAG ACAGACATAT TTATGCTAAC AGGGACAGAA AGGATAATTA
  ACCATAATTC CTGAGATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38103238	NES09261422	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27977215					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103238	NES09261422	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76793683 () rs orientation: forward

Symbol	Name	Function Class
D2Ucl5	DNA segment, Chr 2, University College London 5	581 bp proximal
Tssr24818	transcription start site region 24818	1628 bp upstream
Ttn	titin	within coordinates