rs27977222 SNP Detail

Summary

• ID
  rs27977222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76793036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGAGAAG TATAAACATC
  TAATCTGCCA TGGAAGATTA AAAATACCAT CCTCCCTTCA CATTGAATTT TGGAAGGAGC
  CATGCTATCT ATAACAAGCT CATCAATTAT TTTTATTTGT TGGTTTCTTT TATATAAAAA
  AATATGGACA ACTAATTGAC TCTATAGATG TTTTTTTCTA TGTGTTCATC TTCACCTAAC
  R
  CAAACATATT ACTCTACCTG GAGAAATGGA ATTTTCATTT TATCTCATTG GCGCTTTTTG
  AGCAGCCGAT GATAGAAGAA AATCTGAGGC AGTTTCAAGT TTATTCTAAT GATGAGAAAA
  GTGACTCAAG GTTTCTGTTG ACCAAAAATT AACAACCATG ATAAATACTG CTCCTAATTT
  TAAAAGTATG CCCTCAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38103245	NES09261415	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27977222					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103245	NES09261415	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76793036 () rs orientation: forward

Symbol	Name	Function Class
D2Ucl5	DNA segment, Chr 2, University College London 5	1228 bp proximal
Tssr24818	transcription start site region 24818	981 bp upstream
Ttn	titin	within coordinates