rs27977223 SNP Detail

Summary

• ID
  rs27977223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76792747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGGGCA TGCATATTTT
  AGTGCTCCAC AGCACCAGAA ACATTTCAAG AGGTCACATG GCTCTGGCTG TCCAGTGTAC
  TTTAGAAGTA AGGCTGTACC TTTCTATTAA CCTCCAGTCT TTACTTCTGC TATGAGTGCA
  GTTTAACACG CATCTGAAAT GTCTTCAAGT AAAAAACCCA GACACATTTA AAAAGTAGTC
  Y
  CTGAACCATA TTTAAGGCAT AGCCACGGCC TTTAGAAGAT GGAATTGAGC CTTTAATGAT
  CATGAGGTTT TTGTTTTGTT TTAGTTTTTT TTGAGAAGTA TAAACATCTA ATCTGCCATG
  GAAGATTAAA AATACCATCC TCCCTTCACA TTGAATTTTG GAAGGAGCCA TGCTATCTAT
  AACAAGCTCA TCAATTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38103246	NES09261414	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27977223					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103246	NES09261414	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76792747 () rs orientation: forward

Symbol	Name	Function Class
D2Ucl5	DNA segment, Chr 2, University College London 5	1517 bp proximal
Tssr24818	transcription start site region 24818	692 bp upstream
Ttn	titin	within coordinates