rs27977230 SNP Detail

Summary

• ID
  rs27977230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76792068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAAAGGC TCCTATGTAG
  ATATACTACC TCTATCTGCT AGAGACTAGA CAGTCAATCG CATACACACA CACACACATA
  CATGGAAGAC AGGACAACAC AATATGACAA TATGTATACA AAATCCTAAG GACGTTTTGA
  GTATTTCAAG GAATTTACCT AGGCCAGGCA GACAGTCAAT TAGCACCTGG GAAATGAGGA
  Y
  TTTGGAGCAG GCTGCCTCCA TCGATTATTT CTATTATTTT GTCAATCATT TAGTCCTGGT
  GTCGGCATGA CAACAGCAAA GATAAAAGTC TACTCAAATA CTGTCATCCT CACATCCAGG
  AAAATCAATT GCTGCAGAGC GACATGGCTG CATGTAAGCC CGAGATAAAA AGAGAGTTCC
  CGATCAAAGA ATGAGCACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38103253	NES09261407	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T		T	T	T	T		T
ss320356630	CHEV_2_76799781	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27977230					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103253	NES09261407	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76792068 () rs orientation: forward

Symbol	Name	Function Class
Tssr24818	transcription start site region 24818	13 bp upstream
Ttn	titin	within coordinates