rs27977231 SNP Detail

Summary

• ID
  rs27977231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76791927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGGGGAA CGCCAGGGCC
  AAAGGGGGGG AGTGGGTGGG TAGGGGAGTG GGGGTGGGTG GGTAAGGGGG ACTTTTGGTA
  TAGCATTGGA AATGTAAATG AGCTAAATAC CTAATAAAAA ATGGAAAAAA AAATTATTAT
  ATTTCAAAGG CTCCTATGTA GATATACTAC CTCTATCTGC TAGAGACTAG ACAGTCAATC
  R
  CATACACACA CACACACATA CATGGAAGAC AGGACAACAC AATATGACAA TATGTATACA
  AAATCCTAAG GACGTTTTGA GTATTTCAAG GAATTTACCT AGGCCAGGCA GACAGTCAAT
  TAGCACCTGG GAAATGAGGA TTTTGGAGCA GGCTGCCTCC ATCGATTATT TCTATTATTT
  TGTCAATCAT TTAGTCCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38103254	NES09261406	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		G	A	G	G		A
ss320356628	CHEV_2_76799640	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27977231					SNP	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103254	NES09261406	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76791927 () rs orientation: forward

Symbol	Name	Function Class
Tssr24818	transcription start site region 24818	117 bp downstream
Ttn	titin	within coordinates