rs27978008 SNP Detail

Summary

• ID
  rs27978008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:68891448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCACCAGC CTGAACTCCA
  GACTGCATGG AACTGGCTCT AGCCCATTGT CACAATGTGA CTTTGGAGAA CTTGATGTCT
  AGGTGCCTCA GCTCCCATCT AAAAAAAAAA AAAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGCTCT GAATATTGTT TTATGGAGCT GCCATCAGGA AGACATCACA GCTTCGGAGC
  Y
  TCTGCACATG AAAATTAGTA GTCAAATTAG AAGGTACTTA GGCGTTTGCT AGGTATTCAT
  TGCAAATGTG GGGTTTAGAA AGAGGAAATA TGCATACTTT CTACGCCAGC TTTGAGGAAA
  TGCCACAGCT AGAATTCAGG TGTAGGAGCA GGTACTGGGA TGGCTGAAGG AAGAGGAACA
  AGAAGAAGAT ATGGTTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38132842	NES09276251	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C	T	T	C	C	C	C	C	C
ss146726750	ENSMUSSNP5847028	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27978008					SNP	C	T	T	T	T	T	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38132842	NES09276251	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68891448 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cers6	ceramide synthase 6			Intron
				Noncoding-Transcript-Variant
Rr558369	regulatory region 558369			287 bp proximal
Rr558370	regulatory region 558370			406 bp proximal
Rr558371	regulatory region 558371			733 bp proximal