rs27978014 SNP Detail

Summary

• ID
  rs27978014
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:68890901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGATTCA GATGTCTGGC
  CACTGGAAAG ATTGATCTGC ATAGGTACAG GAGGGTGACA AGAACTTATG TGCTGCTGTA
  TTGCCCAAGG ACCCATACCT GGGACTGTAT ATCCTAAGTC TTGGGCCTCA GCTAGATGTC
  TGCCTCCCTG GGTGTGGGAG AATCTTCTGT TCCTTATGAT ATTCTCTTCA ATTGGAAGTT
  S
  TTATTTGGTC TTCTGGGGGA ATTCCTCTCA AGTCATTCTA GAGAGCCAGA AAAATCTCCA
  CTCTGGGTCA TTGTAGTTCT AACTATCCTG GACTAATGAC CCCATTCAGC CCCTATCCTT
  ATAAATACCA ACAAGCCATG CTTGGGGCTT TGATCTCCCT GGAAGCACTG TGCCTCAGGC
  CCAAGGCCAC TCCTTGCAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38132848	NES09276323	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27978014					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38132848	NES09276323	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68890901 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cers6	ceramide synthase 6			Intron
				Noncoding-Transcript-Variant
Rr558369	regulatory region 558369			834 bp proximal
Rr558370	regulatory region 558370			953 bp proximal
Rr558371	regulatory region 558371			1280 bp proximal