rs27978016 SNP Detail

Summary

• ID
  rs27978016
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:68890785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACCCCCT GGGAGGCAGA
  CAGACTGTAG TGTGTGAGAG GGTATTGGGT CCCTGATCTC ACCCAGGTGG GGAAGCAGCT
  CTACATGCAT TTTTAAAGAT GAAGTTATCT TTCGGTCTTT GATTCAGATG TCTGGCCACT
  GGAAAGATTG ATCTGCATAG GTACAGGAGG GTGACAAGAA CTTATGTGCT GCTGTATTGC
  M
  CAAGGACCCA TACCTGGGAC TGTATATCCT AAGTCTTGGG CCTCAGCTAG ATGTCTGCCT
  CCCTGGGTGT GGGAGAATCT TCTGTTCCTT ATGATATTCT CTTCAATTGG AAGTTGTTAT
  TTGGTCTTCT GGGGGAATTC CTCTCAAGTC ATTCTAGAGA GCCAGAAAAA TCTCCACTCT
  GGGTCATTGT AGTTCTAACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38132850	NES09276321	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C	A	C	C	A	A	A	A	A	A
ss146726747	ENSMUSSNP1848431	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27978016					SNP	A	C	C	C	C	C	C	A	C	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38132850	NES09276321	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68890785 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cers6	ceramide synthase 6			Intron
				Noncoding-Transcript-Variant
Rr558369	regulatory region 558369			950 bp proximal
Rr558370	regulatory region 558370			1069 bp proximal
Rr558371	regulatory region 558371			1396 bp proximal