rs27978018 SNP Detail

Summary

• ID
  rs27978018
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:68890559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATTGAGA GTTTTGCTGG
  GTATAGTATA CTAGACGAGC ATTTGTAGTC TCTTAGGTTC TGAATGACAT CTGTCCAGAA
  TCTTCTGACT GGCCTCCTTG GAGGCAGGTA GAGCTCTGTG ACCTGGGTTA GAACCAGTCT
  CCTGGTAGGT AGGCAGTGCT ATCTCTGGTT AGGATCAACC TCCTGAGTCT CTGGTTAGAG
  M
  AGGCCTCCTG TGACCGTGGT TACTTCAGAC CCCCTGGGAG GCAGACAGAC TGTAGTGTGT
  GAGAGGGTAT TGGGTCCCTG ATCTCACCCA GGTGGGGAAG CAGCTCTACA TGCATTTTTA
  AAGATGAAGT TATCTTTCGG TCTTTGATTC AGATGTCTGG CCACTGGAAA GATTGATCTG
  CATAGGTACA GGAGGGTGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss38132852	NES09276319	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs27978018					SNP	A	A	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38132852	NES09276319	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68890559 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cers6	ceramide synthase 6			Intron
				Noncoding-Transcript-Variant
Rr558369	regulatory region 558369			1176 bp proximal
Rr558370	regulatory region 558370			1295 bp proximal
Rr558371	regulatory region 558371			1622 bp proximal