rs27978618 SNP Detail

Summary

• ID
  rs27978618
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75940358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCACAGAT CTCACTCTCC
  ACTCTCTGTA GTACTGGTGC TCGCTCACAC TGCTGACTGA GGTCTTCAGA ATGTGCCTTC
  CCAGTCCTTA CCCAGCAGCC TCTCCACCTG CACTGTCCTT CCCAGCCCTT GATGTCACCC
  TGGCAGGAAT GCGTCCCTGC TCTGCTCTGC AGTGAAGCTT TTGGTCTCTG ATGTGTGCAG
  M
  TGGCCCTCTG GAGGCTGAGA TATCTGAAGT CGGGCATAAG CAGAAACCAT CCTAGCCATC
  AGGCTTTCGC TTCCGCTCAC GTTCGCAGCT AAGAACAAGG ACCCATGGGT GGCTGAGGGG
  CGAGACAGAT CCAAGAGCTG TCTCGAATGC TGAGCCTGGA CTCGTGCAGA TAGGGAGGCA
  TGTGAACTCG CTTCCACTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38107148	NES09256365	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27978618					SNP	A	A	A	A	A	C	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107148	NES09256365	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75940358 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559651	regulatory region 559651	within coordinates