rs27978621 SNP Detail

Summary

• ID
  rs27978621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75938619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTACCCCG GGAATGGACG TGATCTCTTA AATCTAGACT
  AGGTGATGAG GATGCCCTTT GACCTTCGAC ACCATGTCTC ACCATTTCCT TTGCTCTTAT
  Y
  TCCATATGCA AATGCCACAA GAAGTGTCTA TTCTTGGTGT TTTATTTACT TTGCCATGAT
  GTCAGTTTGT GGCTTGAGCA TTAATACTGA AAACCTGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38107151	NES09256417	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T		T	T	C	T		T	T	T		T
ss45375152	mCV23800674	ABI	CRAMUS_MOUSE	f	SNP		T	T				C		T
ss146770365	ENSMUSSNP6653425	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss320352699	CHEV_2_75946332	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27978621					SNP	T	T	T	C	T	T	C	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107151	NES09256417	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75938619 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559651	regulatory region 559651	1379 bp proximal